WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16A11.5a.1 Sequence Name  C16A11.5a.1
Length (nt)  1990   Chromosome Location  II: 4223305-4226338
Chromosome . Primary Identifier  II Chromosome Location . Start  4223305
Chromosome Location . End  4226338 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16A11.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015818 C16A11.5 C16A11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16A11.5a C16A11.5a 1239   II: 4224295-4224438

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16A11.5a.1 4223305 4226338 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon47102   114   II: 4223305-4223418 Caenorhabditis elegans
Exon47115   109   II: 4223480-4223588 Caenorhabditis elegans
Exon47136   68   II: 4223652-4223719 Caenorhabditis elegans
Exon47146   105   II: 4223804-4223908 Caenorhabditis elegans
Exon47156   165   II: 4223967-4224131 Caenorhabditis elegans
Exon47177   249   II: 4224190-4224438 Caenorhabditis elegans
Exon47197   324   II: 4224957-4225280 Caenorhabditis elegans
Exon47212   353   II: 4225327-4225679 Caenorhabditis elegans
Exon47227   105   II: 4225730-4225834 Caenorhabditis elegans
Exon47242   75   II: 4225890-4225964 Caenorhabditis elegans
Exon47271   323   II: 4226016-4226338 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16A11.5a.1 4223305 4226338 1

1 Sequence

Length
1990

1 Sequence Ontology Term

Identifier Name Description
transcript