WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16A11.5e.1 Sequence Name  C16A11.5e.1
Length (nt)  1860   Chromosome Location  II: 4223314-4226253
Chromosome . Primary Identifier  II Chromosome Location . Start  4223314
Chromosome Location . End  4226253 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16A11.5e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015818 C16A11.5 C16A11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16A11.5e C16A11.5e 1860   II: 4223314-4223418

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16A11.5e.1 4223314 4226253 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon47114   105   II: 4223314-4223418 Caenorhabditis elegans
Exon47129   109   II: 4223480-4223588 Caenorhabditis elegans
Exon47135   35   II: 4223652-4223686 Caenorhabditis elegans
Exon47155   105   II: 4223804-4223908 Caenorhabditis elegans
Exon47170   165   II: 4223967-4224131 Caenorhabditis elegans
Exon47175   87   II: 4224190-4224276 Caenorhabditis elegans
Exon47187   159   II: 4224280-4224438 Caenorhabditis elegans
Exon47211   324   II: 4224957-4225280 Caenorhabditis elegans
Exon47226   353   II: 4225327-4225679 Caenorhabditis elegans
Exon47241   105   II: 4225730-4225834 Caenorhabditis elegans
Exon47256   75   II: 4225890-4225964 Caenorhabditis elegans
Exon47257   238   II: 4226016-4226253 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16A11.5e.1 4223314 4226253 1

1 Sequence

Length
1860

1 Sequence Ontology Term

Identifier Name Description
transcript