WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38A8.3b.1 Sequence Name  Y38A8.3b.1
Length (nt)  2751   Chromosome Location  II: 4955450-4959876
Chromosome . Primary Identifier  II Chromosome Location . Start  4955450
Chromosome Location . End  4959876 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38A8.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006737 ulp-2 Y38A8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38A8.3b Y38A8.3b 2136   II: 4956006-4956392

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38A8.3b.1 4955450 4959876 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon48926   943   II: 4955450-4956392 Caenorhabditis elegans
Exon48930   571   II: 4956443-4957013 Caenorhabditis elegans
Exon48934   103   II: 4957065-4957167 Caenorhabditis elegans
Exon48936   121   II: 4957439-4957559 Caenorhabditis elegans
Exon48938   66   II: 4957606-4957671 Caenorhabditis elegans
Exon48944   25   II: 4958637-4958661 Caenorhabditis elegans
Exon48946   91   II: 4958712-4958802 Caenorhabditis elegans
Exon48948   226   II: 4958850-4959075 Caenorhabditis elegans
Exon48950   273   II: 4959126-4959398 Caenorhabditis elegans
Exon48952   99   II: 4959447-4959545 Caenorhabditis elegans
Exon48954   84   II: 4959596-4959679 Caenorhabditis elegans
Exon48956   149   II: 4959728-4959876 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38A8.3b.1 4955450 4959876 -1

1 Sequence

Length
2751

1 Sequence Ontology Term

Identifier Name Description
transcript