WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27F7.2c.1 Sequence Name  T27F7.2c.1
Length (nt)  1086   Chromosome Location  II: 4983479-4988138
Chromosome . Primary Identifier  II Chromosome Location . Start  4983479
Chromosome Location . End  4988138 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F7.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020867 shc-2 T27F7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27F7.2c T27F7.2c 996   II: 4985073-4985194

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27F7.2c.1 4983479 4988138 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

6 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon48981   90   II: 4983479-4983568 Caenorhabditis elegans
Exon48985   122   II: 4985073-4985194 Caenorhabditis elegans
Exon48990   82   II: 4986117-4986198 Caenorhabditis elegans
Exon48995   326   II: 4987042-4987367 Caenorhabditis elegans
Exon49000   172   II: 4987622-4987793 Caenorhabditis elegans
Exon49005   294   II: 4987845-4988138 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27F7.2c.1 4983479 4988138 1

1 Sequence

Length
1086

1 Sequence Ontology Term

Identifier Name Description
transcript