WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T27F7.2c Sequence Name  T27F7.2c
Length (nt)  996   Chromosome Location  II: 4985073-4985194
Chromosome . Primary Identifier  II Chromosome Location . Start  4985073
Chromosome Location . End  4985194
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F7.2c

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE30457 SHC-2, isoform c 37.1 331 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00054347
WBRNAi00054348
WBRNAi00036052

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T27F7.2c 4985073 4985194 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020867 shc-2 T27F7.2 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:T27F7.2c 4985073 4985194 1
CDS:T27F7.2c 4986117 4986198 1
CDS:T27F7.2c 4987042 4987367 1
CDS:T27F7.2c 4987622 4987793 1
CDS:T27F7.2c 4987845 4988138 1

1 Sequence

Length
996

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T27F7.2c.1 T27F7.2c.1 1086   II: 4983479-4988138
Transcript:T27F7.2c.2 T27F7.2c.2 1796   II: 4985073-4988938