WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F59A6.6a.2 Sequence Name  F59A6.6a.2
Length (nt)  1315   Chromosome Location  II: 4995652-4998030
Chromosome . Primary Identifier  II Chromosome Location . Start  4995652
Chromosome Location . End  4998030 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F59A6.6a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004382 rnh-1.0 F59A6.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F59A6.6a F59A6.6a 468   II: 4995664-4995832

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F59A6.6a.2 4995652 4998030 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49078   181   II: 4995652-4995832 Caenorhabditis elegans
Exon49080   95   II: 4995904-4995998 Caenorhabditis elegans
Exon49084   197   II: 4996050-4996246 Caenorhabditis elegans
Exon49088   86   II: 4996397-4996482 Caenorhabditis elegans
Exon49092   62   II: 4996862-4996923 Caenorhabditis elegans
Exon49096   71   II: 4996994-4997064 Caenorhabditis elegans
Exon49099   102   II: 4997107-4997208 Caenorhabditis elegans
Exon49103   197   II: 4997271-4997467 Caenorhabditis elegans
Exon49106   177   II: 4997662-4997838 Caenorhabditis elegans
Exon49112   147   II: 4997884-4998030 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F59A6.6a.2 4995652 4998030 1

1 Sequence

Length
1315

1 Sequence Ontology Term

Identifier Name Description
transcript