WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27A2.1.1 Sequence Name  C27A2.1.1
Length (nt)  3402   Chromosome Location  II: 5062125-5067129
Chromosome . Primary Identifier  II Chromosome Location . Start  5062125
Chromosome Location . End  5067129 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27A2.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016151 smc-5 C27A2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27A2.1 C27A2.1 3231   II: 5062137-5062228

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27A2.1.1 5062125 5067129 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49206   104   II: 5062125-5062228 Caenorhabditis elegans
Exon49207   195   II: 5062277-5062471 Caenorhabditis elegans
Exon49208   133   II: 5062527-5062659 Caenorhabditis elegans
Exon49209   465   II: 5062704-5063168 Caenorhabditis elegans
Exon49210   328   II: 5063215-5063542 Caenorhabditis elegans
Exon49211   152   II: 5063591-5063742 Caenorhabditis elegans
Exon49212   393   II: 5064653-5065045 Caenorhabditis elegans
Exon49213   150   II: 5065095-5065244 Caenorhabditis elegans
Exon49214   276   II: 5065293-5065568 Caenorhabditis elegans
Exon49215   279   II: 5065831-5066109 Caenorhabditis elegans
Exon49216   708   II: 5066156-5066863 Caenorhabditis elegans
Exon49217   219   II: 5066911-5067129 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27A2.1.1 5062125 5067129 1

1 Sequence

Length
3402

1 Sequence Ontology Term

Identifier Name Description
transcript