WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C27A2.1 Sequence Name  C27A2.1
Length (nt)  3231   Chromosome Location  II: 5062137-5062228
Chromosome . Primary Identifier  II Chromosome Location . Start  5062137
Chromosome Location . End  5062228
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27A2.1

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE27096 SMC-5 123.4 1076 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00041301
WBRNAi00007792
WBRNAi00077952

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C27A2.1 5062137 5062228 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016151 smc-5 C27A2.1 Caenorhabditis elegans

12 Locations


Feature . Primary Identifier
Start End Strand
CDS:C27A2.1 5062137 5062228 1
CDS:C27A2.1 5062277 5062471 1
CDS:C27A2.1 5062527 5062659 1
CDS:C27A2.1 5062704 5063168 1
CDS:C27A2.1 5063215 5063542 1
CDS:C27A2.1 5063591 5063742 1
CDS:C27A2.1 5064653 5065045 1
CDS:C27A2.1 5065095 5065244 1
CDS:C27A2.1 5065293 5065568 1
CDS:C27A2.1 5065831 5066109 1
CDS:C27A2.1 5066156 5066863 1
CDS:C27A2.1 5066911 5066970 1

1 Sequence

Length
3231

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C27A2.1.1 C27A2.1.1 3402   II: 5062125-5067129