WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27A2.6.1 Sequence Name  C27A2.6.1
Length (nt)  2493   Chromosome Location  II: 5078233-5081174
Chromosome . Primary Identifier  II Chromosome Location . Start  5078233
Chromosome Location . End  5081174 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27A2.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001102 dsh-2 C27A2.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27A2.6 C27A2.6 2280   II: 5078429-5078567

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27A2.6.1 5078233 5081174 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49266   335   II: 5078233-5078567 Caenorhabditis elegans
Exon49267   163   II: 5078620-5078782 Caenorhabditis elegans
Exon49268   141   II: 5078784-5078924 Caenorhabditis elegans
Exon49269   372   II: 5078978-5079349 Caenorhabditis elegans
Exon49270   408   II: 5079401-5079808 Caenorhabditis elegans
Exon49271   291   II: 5079880-5080170 Caenorhabditis elegans
Exon49272   96   II: 5080217-5080312 Caenorhabditis elegans
Exon49273   206   II: 5080359-5080564 Caenorhabditis elegans
Exon49274   149   II: 5080628-5080776 Caenorhabditis elegans
Exon49275   332   II: 5080843-5081174 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27A2.6.1 5078233 5081174 -1

1 Sequence

Length
2493

1 Sequence Ontology Term

Identifier Name Description
transcript