WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04G6.1c.1 Sequence Name  C04G6.1c.1
Length (nt)  1963   Chromosome Location  II: 5104118-5108899
Chromosome . Primary Identifier  II Chromosome Location . Start  5104118
Chromosome Location . End  5108899 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04G6.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003402 mpk-2 C04G6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04G6.1c C04G6.1c 1713   II: 5104646-5104771

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04G6.1c.1 5104118 5108899 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49285   154   II: 5104118-5104271 Caenorhabditis elegans
Exon49291   132   II: 5104640-5104771 Caenorhabditis elegans
Exon49294   282   II: 5104828-5105109 Caenorhabditis elegans
Exon49299   159   II: 5105411-5105569 Caenorhabditis elegans
Exon49303   68   II: 5105617-5105684 Caenorhabditis elegans
Exon49307   253   II: 5106095-5106347 Caenorhabditis elegans
Exon49311   107   II: 5106397-5106503 Caenorhabditis elegans
Exon49314   114   II: 5106812-5106925 Caenorhabditis elegans
Exon49318   125   II: 5107616-5107740 Caenorhabditis elegans
Exon49321   244   II: 5107789-5108032 Caenorhabditis elegans
Exon49324   130   II: 5108527-5108656 Caenorhabditis elegans
Exon49327   195   II: 5108705-5108899 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04G6.1c.1 5104118 5108899 1

1 Sequence

Length
1963

1 Sequence Ontology Term

Identifier Name Description
transcript