WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04G6.1a.1 Sequence Name  C04G6.1a.1
Length (nt)  1910   Chromosome Location  II: 5104464-5108901
Chromosome . Primary Identifier  II Chromosome Location . Start  5104464
Chromosome Location . End  5108901 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04G6.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003402 mpk-2 C04G6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04G6.1a C04G6.1a 1818   II: 5104464-5104562

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04G6.1a.1 5104464 5108901 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49324   99   II: 5104464-5104562 Caenorhabditis elegans
Exon49326   132   II: 5104640-5104771 Caenorhabditis elegans
Exon49329   282   II: 5104828-5105109 Caenorhabditis elegans
Exon49334   159   II: 5105411-5105569 Caenorhabditis elegans
Exon49338   68   II: 5105617-5105684 Caenorhabditis elegans
Exon49342   253   II: 5106095-5106347 Caenorhabditis elegans
Exon49346   107   II: 5106397-5106503 Caenorhabditis elegans
Exon49350   114   II: 5106812-5106925 Caenorhabditis elegans
Exon49354   125   II: 5107616-5107740 Caenorhabditis elegans
Exon49357   244   II: 5107789-5108032 Caenorhabditis elegans
Exon49360   130   II: 5108527-5108656 Caenorhabditis elegans
Exon49365   197   II: 5108705-5108901 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04G6.1a.1 5104464 5108901 1

1 Sequence

Length
1910

1 Sequence Ontology Term

Identifier Name Description
transcript