WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F09C12.1a.1 Sequence Name  F09C12.1a.1
Length (nt)  1598   Chromosome Location  II: 5130381-5133472
Chromosome . Primary Identifier  II Chromosome Location . Start  5130381
Chromosome Location . End  5133472 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F09C12.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001588 lgc-56 F09C12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F09C12.1a F09C12.1a 1338   II: 5130384-5130506

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F09C12.1a.1 5130381 5133472 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49365   126   II: 5130381-5130506 Caenorhabditis elegans
Exon49366   78   II: 5130612-5130689 Caenorhabditis elegans
Exon49368   89   II: 5130938-5131026 Caenorhabditis elegans
Exon49370   146   II: 5131072-5131217 Caenorhabditis elegans
Exon49372   277   II: 5131266-5131542 Caenorhabditis elegans
Exon49374   199   II: 5131879-5132077 Caenorhabditis elegans
Exon49376   155   II: 5132122-5132276 Caenorhabditis elegans
Exon49378   102   II: 5132327-5132428 Caenorhabditis elegans
Exon49380   128   II: 5132920-5133047 Caenorhabditis elegans
Exon49383   298   II: 5133175-5133472 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F09C12.1a.1 5130381 5133472 1

1 Sequence

Length
1598

1 Sequence Ontology Term

Identifier Name Description
transcript