WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:EGAP2.3.1 Sequence Name  EGAP2.3.1
Length (nt)  1511   Chromosome Location  II: 5233156-5235846
Chromosome . Primary Identifier  II Chromosome Location . Start  5233156
Chromosome Location . End  5235846 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
EGAP2.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004020 pho-1 EGAP2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:EGAP2.3 EGAP2.3 1350   II: 5233303-5233343

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:EGAP2.3.1 5233156 5235846 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49734   188   II: 5233156-5233343 Caenorhabditis elegans
Exon49735   64   II: 5233421-5233484 Caenorhabditis elegans
Exon49736   288   II: 5233533-5233820 Caenorhabditis elegans
Exon49737   173   II: 5233888-5234060 Caenorhabditis elegans
Exon49738   118   II: 5234400-5234517 Caenorhabditis elegans
Exon49739   93   II: 5234566-5234658 Caenorhabditis elegans
Exon49740   96   II: 5234710-5234805 Caenorhabditis elegans
Exon49741   180   II: 5235052-5235231 Caenorhabditis elegans
Exon49742   96   II: 5235279-5235374 Caenorhabditis elegans
Exon49743   105   II: 5235585-5235689 Caenorhabditis elegans
Exon49744   110   II: 5235737-5235846 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:EGAP2.3.1 5233156 5235846 -1

1 Sequence

Length
1511

1 Sequence Ontology Term

Identifier Name Description
transcript