WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08B1.2a.1 Sequence Name  F08B1.2a.1
Length (nt)  5648   Chromosome Location  II: 5312046-5319617
Chromosome . Primary Identifier  II Chromosome Location . Start  5312046
Chromosome Location . End  5319617 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08B1.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001538 gcy-12 F08B1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08B1.2a F08B1.2a 5040   II: 5312120-5312338

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F08B1.2a.1 5312046 5319617 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49836   293   II: 5312046-5312338 Caenorhabditis elegans
Exon49838   313   II: 5312390-5312702 Caenorhabditis elegans
Exon49840   151   II: 5313113-5313263 Caenorhabditis elegans
Exon49842   308   II: 5313330-5313637 Caenorhabditis elegans
Exon49844   156   II: 5313683-5313838 Caenorhabditis elegans
Exon49846   194   II: 5313887-5314080 Caenorhabditis elegans
Exon49848   154   II: 5314125-5314278 Caenorhabditis elegans
Exon49850   361   II: 5314701-5315061 Caenorhabditis elegans
Exon49852   1726   II: 5315108-5316833 Caenorhabditis elegans
Exon49854   133   II: 5316879-5317011 Caenorhabditis elegans
Exon49857   247   II: 5317469-5317715 Caenorhabditis elegans
Exon49858   345   II: 5317770-5318114 Caenorhabditis elegans
Exon49860   202   II: 5318189-5318390 Caenorhabditis elegans
Exon49862   206   II: 5318444-5318649 Caenorhabditis elegans
Exon49864   197   II: 5318706-5318902 Caenorhabditis elegans
Exon49867   662   II: 5318956-5319617 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F08B1.2a.1 5312046 5319617 1

1 Sequence

Length
5648

1 Sequence Ontology Term

Identifier Name Description
transcript