WormMine: Gene WBGene00023218

• WormBase Gene ID: WBGene00023218
• Gene Name: rte-4
• Sequence Name: ZK622.t2
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by prg-1 based on RNA-seq studies.
• Biotype: SO:0001272
• Genetic Position: II :-1.79664 ±0.001209
• Length (nt): 72

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00023218

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:ZK622.t2	ZK622.t2	72	II: 5293452-5293523

Other

0 CDSs

0 RNAi Result

5 Allele

• gk963801
• gk963053
• gk963388
• qm213
• gk964235

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00023218
• Start: 5293452
• End: 5293523
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Protein coding genes with decreased expression in prg-1(wm161) comparing to in N2.	Cuffdiff and DEGseq were used to calculate the differential expression of protein-coding genes with and without the prg-1 mutation, and authors selected genes which had more than two-fold difference in expression (P < 0.05, q < 0.01 of Storey) from DEGseq outcomes. The intersection of genes which authors selected from DEGseq outcomes and genes which had more than two-fold difference in expression (P < 0.05) from Cuffdiff outcomes was defined as differentially expressed genes.	WBPaper00045316:prg-1_downregulated_L4

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00023218
• Start: 5293452
• End: 5293523
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 72

1 Sequence Ontology Term