WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F07F6.6.1 Sequence Name  F07F6.6.1
Length (nt)  3157   Chromosome Location  II: 5440238-5446606
Chromosome . Primary Identifier  II Chromosome Location . Start  5440238
Chromosome Location . End  5446606 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F07F6.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003774 nmr-1 F07F6.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F07F6.6 F07F6.6 3078   II: 5440315-5440518

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F07F6.6.1 5440238 5446606 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon50224   281   II: 5440238-5440518 Caenorhabditis elegans
Exon50225   268   II: 5440801-5441068 Caenorhabditis elegans
Exon50226   92   II: 5441113-5441204 Caenorhabditis elegans
Exon50227   107   II: 5442981-5443087 Caenorhabditis elegans
Exon50228   196   II: 5443139-5443334 Caenorhabditis elegans
Exon50229   135   II: 5443380-5443514 Caenorhabditis elegans
Exon50230   149   II: 5443557-5443705 Caenorhabditis elegans
Exon50231   277   II: 5443760-5444036 Caenorhabditis elegans
Exon50232   153   II: 5444129-5444281 Caenorhabditis elegans
Exon50233   81   II: 5444342-5444422 Caenorhabditis elegans
Exon50234   105   II: 5444470-5444574 Caenorhabditis elegans
Exon50235   207   II: 5444621-5444827 Caenorhabditis elegans
Exon50236   406   II: 5445125-5445530 Caenorhabditis elegans
Exon50237   101   II: 5445572-5445672 Caenorhabditis elegans
Exon50238   87   II: 5445724-5445810 Caenorhabditis elegans
Exon50239   93   II: 5445858-5445950 Caenorhabditis elegans
Exon50240   202   II: 5445999-5446200 Caenorhabditis elegans
Exon50241   83   II: 5446260-5446342 Caenorhabditis elegans
Exon50242   134   II: 5446473-5446606 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F07F6.6.1 5440238 5446606 -1

1 Sequence

Length
3157

1 Sequence Ontology Term

Identifier Name Description
transcript