WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56D1.4a.1 Sequence Name  F56D1.4a.1
Length (nt)  4776   Chromosome Location  II: 5466359-5473816
Chromosome . Primary Identifier  II Chromosome Location . Start  5466359
Chromosome Location . End  5473816 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56D1.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000548 clr-1 F56D1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56D1.4a F56D1.4a 4230   II: 5466474-5466547

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56D1.4a.1 5466359 5473816 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon50232   189   II: 5466359-5466547 Caenorhabditis elegans
Exon50236   104   II: 5466595-5466698 Caenorhabditis elegans
Exon50241   105   II: 5467003-5467107 Caenorhabditis elegans
Exon50246   107   II: 5467155-5467261 Caenorhabditis elegans
Exon50251   103   II: 5467613-5467715 Caenorhabditis elegans
Exon50256   333   II: 5467899-5468231 Caenorhabditis elegans
Exon50262   100   II: 5468884-5468983 Caenorhabditis elegans
Exon50269   173   II: 5469389-5469561 Caenorhabditis elegans
Exon50274   302   II: 5469612-5469913 Caenorhabditis elegans
Exon50279   200   II: 5469960-5470159 Caenorhabditis elegans
Exon50284   384   II: 5470217-5470600 Caenorhabditis elegans
Exon50289   747   II: 5470835-5471581 Caenorhabditis elegans
Exon50295   96   II: 5471629-5471724 Caenorhabditis elegans
Exon50299   74   II: 5471778-5471851 Caenorhabditis elegans
Exon50304   139   II: 5471916-5472054 Caenorhabditis elegans
Exon50309   691   II: 5472100-5472790 Caenorhabditis elegans
Exon50314   302   II: 5472839-5473140 Caenorhabditis elegans
Exon50323   627   II: 5473190-5473816 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56D1.4a.1 5466359 5473816 1

1 Sequence

Length
4776

1 Sequence Ontology Term

Identifier Name Description
transcript