WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0034.3a.1 Sequence Name  B0034.3a.1
Length (nt)  3442   Chromosome Location  II: 5945407-5956683
Chromosome . Primary Identifier  II Chromosome Location . Start  5945407
Chromosome Location . End  5956683 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0034.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000403 casy-1 B0034.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0034.3a B0034.3a 2955   II: 5945855-5946014

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0034.3a.1 5945407 5956683 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon51974   608   II: 5945407-5946014 Caenorhabditis elegans
Exon51977   134   II: 5946480-5946613 Caenorhabditis elegans
Exon51981   119   II: 5946889-5947007 Caenorhabditis elegans
Exon51986   82   II: 5947234-5947315 Caenorhabditis elegans
Exon51992   177   II: 5951421-5951597 Caenorhabditis elegans
Exon51993   162   II: 5953248-5953409 Caenorhabditis elegans
Exon51994   149   II: 5953466-5953614 Caenorhabditis elegans
Exon51995   795   II: 5953665-5954459 Caenorhabditis elegans
Exon51996   892   II: 5954505-5955396 Caenorhabditis elegans
Exon51997   104   II: 5955621-5955724 Caenorhabditis elegans
Exon51998   105   II: 5956411-5956515 Caenorhabditis elegans
Exon51999   115   II: 5956569-5956683 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0034.3a.1 5945407 5956683 -1

1 Sequence

Length
3442

1 Sequence Ontology Term

Identifier Name Description
transcript