WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F18C5.3.1 Sequence Name  F18C5.3.1
Length (nt)  8176   Chromosome Location  II: 6536374-6554923
Chromosome . Primary Identifier  II Chromosome Location . Start  6536374
Chromosome Location . End  6554923 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F18C5.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007050 utp-20 F18C5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F18C5.3 F18C5.3 7914   II: 6536384-6536458

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F18C5.3.1 6536374 6554923 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon53564   85   II: 6536374-6536458 Caenorhabditis elegans
Exon53565   145   II: 6536512-6536656 Caenorhabditis elegans
Exon53566   222   II: 6536700-6536921 Caenorhabditis elegans
Exon53567   109   II: 6536969-6537077 Caenorhabditis elegans
Exon53568   400   II: 6537123-6537522 Caenorhabditis elegans
Exon53569   634   II: 6537583-6538216 Caenorhabditis elegans
Exon53570   250   II: 6538267-6538516 Caenorhabditis elegans
Exon53571   518   II: 6538563-6539080 Caenorhabditis elegans
Exon53572   175   II: 6539128-6539302 Caenorhabditis elegans
Exon53573   629   II: 6539395-6540023 Caenorhabditis elegans
Exon53574   85   II: 6540069-6540153 Caenorhabditis elegans
Exon53593   184   II: 6546722-6546905 Caenorhabditis elegans
Exon53594   113   II: 6547398-6547510 Caenorhabditis elegans
Exon53595   154   II: 6547658-6547811 Caenorhabditis elegans
Exon53596   151   II: 6547855-6548005 Caenorhabditis elegans
Exon53598   584   II: 6549508-6550091 Caenorhabditis elegans
Exon53599   153   II: 6550138-6550290 Caenorhabditis elegans
Exon53600   612   II: 6550336-6550947 Caenorhabditis elegans
Exon53601   146   II: 6550995-6551140 Caenorhabditis elegans
Exon53602   157   II: 6551812-6551968 Caenorhabditis elegans
Exon53603   1263   II: 6552018-6553280 Caenorhabditis elegans
Exon53604   183   II: 6553331-6553513 Caenorhabditis elegans
Exon53605   140   II: 6553566-6553705 Caenorhabditis elegans
Exon53606   409   II: 6553753-6554161 Caenorhabditis elegans
Exon53607   115   II: 6554205-6554319 Caenorhabditis elegans
Exon53608   560   II: 6554364-6554923 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F18C5.3.1 6536374 6554923 1

1 Sequence

Length
8176

1 Sequence Ontology Term

Identifier Name Description
transcript