WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C18H9.7.2 Sequence Name  C18H9.7.2
Length (nt)  2137   Chromosome Location  II: 6702213-6705499
Chromosome . Primary Identifier  II Chromosome Location . Start  6702213
Chromosome Location . End  6705499 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C18H9.7.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004507 rpy-1 C18H9.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C18H9.7 C18H9.7 1848   II: 6702496-6702600

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C18H9.7.2 6702213 6705499 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon54161   388   II: 6702213-6702600 Caenorhabditis elegans
Exon54164   356   II: 6702704-6703059 Caenorhabditis elegans
Exon54166   131   II: 6703315-6703445 Caenorhabditis elegans
Exon54168   200   II: 6703494-6703693 Caenorhabditis elegans
Exon54170   129   II: 6703743-6703871 Caenorhabditis elegans
Exon54172   66   II: 6704102-6704167 Caenorhabditis elegans
Exon54174   117   II: 6704314-6704430 Caenorhabditis elegans
Exon54176   163   II: 6704483-6704645 Caenorhabditis elegans
Exon54178   148   II: 6704688-6704835 Caenorhabditis elegans
Exon54180   266   II: 6704881-6705146 Caenorhabditis elegans
Exon54182   77   II: 6705196-6705272 Caenorhabditis elegans
Exon54184   96   II: 6705404-6705499 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C18H9.7.2 6702213 6705499 -1

1 Sequence

Length
2137

1 Sequence Ontology Term

Identifier Name Description
transcript