WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F22D3.6.1 Sequence Name  F22D3.6.1
Length (nt)  2042   Chromosome Location  II: 6947855-6951300
Chromosome . Primary Identifier  II Chromosome Location . Start  6947855
Chromosome Location . End  6951300 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F22D3.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017702 malt-1 F22D3.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F22D3.6 F22D3.6 1920   II: 6947976-6948308

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F22D3.6.1 6947855 6951300 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon55133   454   II: 6947855-6948308 Caenorhabditis elegans
Exon55134   89   II: 6948354-6948442 Caenorhabditis elegans
Exon55135   150   II: 6948734-6948883 Caenorhabditis elegans
Exon55136   97   II: 6948957-6949053 Caenorhabditis elegans
Exon55137   115   II: 6949101-6949215 Caenorhabditis elegans
Exon55138   74   II: 6949423-6949496 Caenorhabditis elegans
Exon55139   113   II: 6949545-6949657 Caenorhabditis elegans
Exon55140   100   II: 6949706-6949805 Caenorhabditis elegans
Exon55141   224   II: 6950101-6950324 Caenorhabditis elegans
Exon55142   161   II: 6950374-6950534 Caenorhabditis elegans
Exon55143   169   II: 6950577-6950745 Caenorhabditis elegans
Exon55144   91   II: 6950905-6950995 Caenorhabditis elegans
Exon55145   82   II: 6951043-6951124 Caenorhabditis elegans
Exon55146   123   II: 6951178-6951300 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F22D3.6.1 6947855 6951300 -1

1 Sequence

Length
2042

1 Sequence Ontology Term

Identifier Name Description
transcript