WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52E12.4.1 Sequence Name  C52E12.4.1
Length (nt)  4897   Chromosome Location  II: 7012780-7022509
Chromosome . Primary Identifier  II Chromosome Location . Start  7012780
Chromosome Location . End  7022509 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52E12.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016889 lst-6 C52E12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52E12.4 C52E12.4 4464   II: 7013213-7013393

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52E12.4.1 7012780 7022509 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon55594   614   II: 7012780-7013393 Caenorhabditis elegans
Exon55595   78   II: 7014228-7014305 Caenorhabditis elegans
Exon55596   94   II: 7014509-7014602 Caenorhabditis elegans
Exon55597   213   II: 7014650-7014862 Caenorhabditis elegans
Exon55598   364   II: 7014913-7015276 Caenorhabditis elegans
Exon55599   137   II: 7015335-7015471 Caenorhabditis elegans
Exon55600   122   II: 7015526-7015647 Caenorhabditis elegans
Exon55601   129   II: 7015704-7015832 Caenorhabditis elegans
Exon55602   172   II: 7016208-7016379 Caenorhabditis elegans
Exon55603   399   II: 7016674-7017072 Caenorhabditis elegans
Exon55604   97   II: 7017457-7017553 Caenorhabditis elegans
Exon55605   158   II: 7017605-7017762 Caenorhabditis elegans
Exon55606   724   II: 7017814-7018537 Caenorhabditis elegans
Exon55607   194   II: 7018615-7018808 Caenorhabditis elegans
Exon55608   634   II: 7018954-7019587 Caenorhabditis elegans
Exon55609   175   II: 7019633-7019807 Caenorhabditis elegans
Exon55610   88   II: 7020153-7020240 Caenorhabditis elegans
Exon55612   262   II: 7021607-7021868 Caenorhabditis elegans
Exon55613   159   II: 7021916-7022074 Caenorhabditis elegans
Exon55614   84   II: 7022426-7022509 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52E12.4.1 7012780 7022509 -1

1 Sequence

Length
4897

1 Sequence Ontology Term

Identifier Name Description
transcript