WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52E12.1a.1 Sequence Name  C52E12.1a.1
Length (nt)  3058   Chromosome Location  II: 7025802-7030152
Chromosome . Primary Identifier  II Chromosome Location . Start  7025802
Chromosome Location . End  7030152 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52E12.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016888 znf-598 C52E12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52E12.1a C52E12.1a 2778   II: 7025814-7025864

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52E12.1a.1 7025802 7030152 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon55624   63   II: 7025802-7025864 Caenorhabditis elegans
Exon55625   52   II: 7025913-7025964 Caenorhabditis elegans
Exon55627   119   II: 7026010-7026128 Caenorhabditis elegans
Exon55629   78   II: 7026177-7026254 Caenorhabditis elegans
Exon55631   263   II: 7026303-7026565 Caenorhabditis elegans
Exon55633   324   II: 7026619-7026942 Caenorhabditis elegans
Exon55635   198   II: 7026986-7027183 Caenorhabditis elegans
Exon55638   217   II: 7027233-7027449 Caenorhabditis elegans
Exon55639   513   II: 7027598-7028110 Caenorhabditis elegans
Exon55641   326   II: 7028159-7028484 Caenorhabditis elegans
Exon55643   130   II: 7028912-7029041 Caenorhabditis elegans
Exon55645   156   II: 7029085-7029240 Caenorhabditis elegans
Exon55647   96   II: 7029290-7029385 Caenorhabditis elegans
Exon55649   192   II: 7029432-7029623 Caenorhabditis elegans
Exon55651   331   II: 7029822-7030152 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52E12.1a.1 7025802 7030152 1

1 Sequence

Length
3058

1 Sequence Ontology Term

Identifier Name Description
transcript