WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:E04F6.11f.1 Sequence Name  E04F6.11f.1
Length (nt)  3527   Chromosome Location  II: 7217948-7222997
Chromosome . Primary Identifier  II Chromosome Location . Start  7217948
Chromosome Location . End  7222997 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
E04F6.11f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000530 clh-3 E04F6.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:E04F6.11f E04F6.11f 3063   II: 7218412-7218484

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:E04F6.11f.1 7217948 7222997 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon56255   537   II: 7217948-7218484 Caenorhabditis elegans
Exon56269   245   II: 7218529-7218773 Caenorhabditis elegans
Exon56280   198   II: 7218842-7219039 Caenorhabditis elegans
Exon56292   87   II: 7219172-7219258 Caenorhabditis elegans
Exon56304   105   II: 7219304-7219408 Caenorhabditis elegans
Exon56308   42   II: 7219612-7219653 Caenorhabditis elegans
Exon56319   92   II: 7219732-7219823 Caenorhabditis elegans
Exon56330   209   II: 7219878-7220086 Caenorhabditis elegans
Exon56342   217   II: 7220133-7220349 Caenorhabditis elegans
Exon56353   253   II: 7220399-7220651 Caenorhabditis elegans
Exon56365   279   II: 7220700-7220978 Caenorhabditis elegans
Exon56378   201   II: 7221032-7221232 Caenorhabditis elegans
Exon56389   187   II: 7221271-7221457 Caenorhabditis elegans
Exon56401   374   II: 7221503-7221876 Caenorhabditis elegans
Exon56413   266   II: 7221931-7222196 Caenorhabditis elegans
Exon56425   120   II: 7222387-7222506 Caenorhabditis elegans
Exon56437   76   II: 7222561-7222636 Caenorhabditis elegans
Exon56442   39   II: 7222959-7222997 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:E04F6.11f.1 7217948 7222997 -1

1 Sequence

Length
3527

1 Sequence Ontology Term

Identifier Name Description
transcript