WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F32A5.2a.2 Sequence Name  F32A5.2a.2
Length (nt)  3217   Chromosome Location  II: 7245915-7250189
Chromosome . Primary Identifier  II Chromosome Location . Start  7245915
Chromosome Location . End  7250189 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F32A5.2a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017968 skpo-3 F32A5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F32A5.2a F32A5.2a 3003   II: 7245918-7245984

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F32A5.2a.2 7245915 7250189 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon56505   70   II: 7245915-7245984 Caenorhabditis elegans
Exon56507   107   II: 7246035-7246141 Caenorhabditis elegans
Exon56510   132   II: 7246293-7246424 Caenorhabditis elegans
Exon56513   101   II: 7246469-7246569 Caenorhabditis elegans
Exon56516   423   II: 7246824-7247246 Caenorhabditis elegans
Exon56518   315   II: 7247335-7247649 Caenorhabditis elegans
Exon56521   125   II: 7247812-7247936 Caenorhabditis elegans
Exon56524   240   II: 7247982-7248221 Caenorhabditis elegans
Exon56527   235   II: 7248278-7248512 Caenorhabditis elegans
Exon56530   203   II: 7248561-7248763 Caenorhabditis elegans
Exon56533   862   II: 7248816-7249677 Caenorhabditis elegans
Exon56536   103   II: 7249730-7249832 Caenorhabditis elegans
Exon56540   301   II: 7249889-7250189 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F32A5.2a.2 7245915 7250189 1

1 Sequence

Length
3217

1 Sequence Ontology Term

Identifier Name Description
transcript