WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F35D2.5a.1 Sequence Name  F35D2.5a.1
Length (nt)  3351   Chromosome Location  II: 7585697-7594912
Chromosome . Primary Identifier  II Chromosome Location . Start  7585697
Chromosome Location . End  7594912 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F35D2.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006363 syd-1 F35D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F35D2.5a F35D2.5a 2964   II: 7586080-7586162

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F35D2.5a.1 7585697 7594912 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon57472   466   II: 7585697-7586162 Caenorhabditis elegans
Exon57473   151   II: 7586704-7586854 Caenorhabditis elegans
Exon57476   356   II: 7586902-7587257 Caenorhabditis elegans
Exon57479   436   II: 7587325-7587760 Caenorhabditis elegans
Exon57482   479   II: 7587814-7588292 Caenorhabditis elegans
Exon57485   123   II: 7588587-7588709 Caenorhabditis elegans
Exon57488   268   II: 7588758-7589025 Caenorhabditis elegans
Exon57491   118   II: 7589177-7589294 Caenorhabditis elegans
Exon57494   155   II: 7589410-7589564 Caenorhabditis elegans
Exon57499   102   II: 7591134-7591235 Caenorhabditis elegans
Exon57501   79   II: 7591281-7591359 Caenorhabditis elegans
Exon57503   126   II: 7591402-7591527 Caenorhabditis elegans
Exon57505   150   II: 7591577-7591726 Caenorhabditis elegans
Exon57507   115   II: 7591771-7591885 Caenorhabditis elegans
Exon57509   43   II: 7591982-7592024 Caenorhabditis elegans
Exon57512   104   II: 7594567-7594670 Caenorhabditis elegans
Exon57513   80   II: 7594833-7594912 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F35D2.5a.1 7585697 7594912 -1

1 Sequence

Length
3351

1 Sequence Ontology Term

Identifier Name Description
transcript