WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T09A5.3.1 Sequence Name  T09A5.3.1
Length (nt)  1723   Chromosome Location  II: 7845631-7849797
Chromosome . Primary Identifier  II Chromosome Location . Start  7845631
Chromosome Location . End  7849797 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T09A5.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000046 acr-7 T09A5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T09A5.3 T09A5.3 1617   II: 7845664-7845783

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T09A5.3.1 7845631 7849797 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon58465   153   II: 7845631-7845783 Caenorhabditis elegans
Exon58467   116   II: 7846204-7846319 Caenorhabditis elegans
Exon58468   100   II: 7846365-7846464 Caenorhabditis elegans
Exon58475   123   II: 7847976-7848098 Caenorhabditis elegans
Exon58476   114   II: 7848145-7848258 Caenorhabditis elegans
Exon58477   197   II: 7848307-7848503 Caenorhabditis elegans
Exon58478   134   II: 7848557-7848690 Caenorhabditis elegans
Exon58479   118   II: 7848740-7848857 Caenorhabditis elegans
Exon58480   124   II: 7848948-7849071 Caenorhabditis elegans
Exon58481   91   II: 7849120-7849210 Caenorhabditis elegans
Exon58482   125   II: 7849257-7849381 Caenorhabditis elegans
Exon58483   148   II: 7849428-7849575 Caenorhabditis elegans
Exon58484   180   II: 7849618-7849797 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T09A5.3.1 7845631 7849797 -1

1 Sequence

Length
1723

1 Sequence Ontology Term

Identifier Name Description
transcript