WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:DH11.3.2 Sequence Name  DH11.3.2
Length (nt)  3930   Chromosome Location  II: 7995580-8000469
Chromosome . Primary Identifier  II Chromosome Location . Start  7995580
Chromosome Location . End  8000469 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
DH11.3.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004005 pgp-11 DH11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:DH11.3 DH11.3 3726   II: 7995705-7995813

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:DH11.3.2 7995580 8000469 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon58841   234   II: 7995580-7995813 Caenorhabditis elegans
Exon58844   236   II: 7995862-7996097 Caenorhabditis elegans
Exon58846   201   II: 7996259-7996459 Caenorhabditis elegans
Exon58848   474   II: 7996508-7996981 Caenorhabditis elegans
Exon58850   315   II: 7997032-7997346 Caenorhabditis elegans
Exon58852   162   II: 7997444-7997605 Caenorhabditis elegans
Exon58854   93   II: 7997652-7997744 Caenorhabditis elegans
Exon58856   495   II: 7997791-7998285 Caenorhabditis elegans
Exon58858   474   II: 7998341-7998814 Caenorhabditis elegans
Exon58860   286   II: 7998861-7999146 Caenorhabditis elegans
Exon58862   119   II: 7999255-7999373 Caenorhabditis elegans
Exon58864   123   II: 7999421-7999543 Caenorhabditis elegans
Exon58866   172   II: 7999610-7999781 Caenorhabditis elegans
Exon58868   230   II: 7999829-8000058 Caenorhabditis elegans
Exon58870   135   II: 8000107-8000241 Caenorhabditis elegans
Exon58872   181   II: 8000289-8000469 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:DH11.3.2 7995580 8000469 -1

1 Sequence

Length
3930

1 Sequence Ontology Term

Identifier Name Description
transcript