WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:DH11.3.1 Sequence Name  DH11.3.1
Length (nt)  3980   Chromosome Location  II: 7995580-8004257
Chromosome . Primary Identifier  II Chromosome Location . Start  7995580
Chromosome Location . End  8004257 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
DH11.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004005 pgp-11 DH11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:DH11.3 DH11.3 3726   II: 7995705-7995813

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:DH11.3.1 7995580 8004257 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon58842   234   II: 7995580-7995813 Caenorhabditis elegans
Exon58843   236   II: 7995862-7996097 Caenorhabditis elegans
Exon58845   201   II: 7996259-7996459 Caenorhabditis elegans
Exon58847   474   II: 7996508-7996981 Caenorhabditis elegans
Exon58849   315   II: 7997032-7997346 Caenorhabditis elegans
Exon58851   162   II: 7997444-7997605 Caenorhabditis elegans
Exon58853   93   II: 7997652-7997744 Caenorhabditis elegans
Exon58855   495   II: 7997791-7998285 Caenorhabditis elegans
Exon58857   474   II: 7998341-7998814 Caenorhabditis elegans
Exon58859   286   II: 7998861-7999146 Caenorhabditis elegans
Exon58861   119   II: 7999255-7999373 Caenorhabditis elegans
Exon58863   123   II: 7999421-7999543 Caenorhabditis elegans
Exon58865   172   II: 7999610-7999781 Caenorhabditis elegans
Exon58867   230   II: 7999829-8000058 Caenorhabditis elegans
Exon58869   135   II: 8000107-8000241 Caenorhabditis elegans
Exon58871   175   II: 8000289-8000463 Caenorhabditis elegans
Exon58873   56   II: 8004202-8004257 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:DH11.3.1 7995580 8004257 -1

1 Sequence

Length
3980

1 Sequence Ontology Term

Identifier Name Description
transcript