WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K02C4.4a.1 Sequence Name  K02C4.4a.1
Length (nt)  2600   Chromosome Location  II: 8088427-8092754
Chromosome . Primary Identifier  II Chromosome Location . Start  8088427
Chromosome Location . End  8092754 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K02C4.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003089 ltd-1 K02C4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K02C4.4a K02C4.4a 2172   II: 8088790-8088927

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K02C4.4a.1 8088427 8092754 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon59132   501   II: 8088427-8088927 Caenorhabditis elegans
Exon59134   261   II: 8089371-8089631 Caenorhabditis elegans
Exon59136   129   II: 8090118-8090246 Caenorhabditis elegans
Exon59138   156   II: 8090292-8090447 Caenorhabditis elegans
Exon59140   244   II: 8090500-8090743 Caenorhabditis elegans
Exon59142   165   II: 8090812-8090976 Caenorhabditis elegans
Exon59144   251   II: 8091021-8091271 Caenorhabditis elegans
Exon59147   177   II: 8091319-8091495 Caenorhabditis elegans
Exon59149   358   II: 8091856-8092213 Caenorhabditis elegans
Exon59150   199   II: 8092269-8092467 Caenorhabditis elegans
Exon59151   159   II: 8092596-8092754 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K02C4.4a.1 8088427 8092754 -1

1 Sequence

Length
2600

1 Sequence Ontology Term

Identifier Name Description
transcript