WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C41C4.4a.1 Sequence Name  C41C4.4a.1
Length (nt)  3401   Chromosome Location  II: 8112243-8124910
Chromosome . Primary Identifier  II Chromosome Location . Start  8112243
Chromosome Location . End  8124910 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C41C4.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002147 ire-1 C41C4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C41C4.4a C41C4.4a 2904   II: 8112670-8112843

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C41C4.4a.1 8112243 8124910 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon59153   601   II: 8112243-8112843 Caenorhabditis elegans
Exon59155   75   II: 8112894-8112968 Caenorhabditis elegans
Exon59157   416   II: 8113020-8113435 Caenorhabditis elegans
Exon59159   1113   II: 8113484-8114596 Caenorhabditis elegans
Exon59162   325   II: 8114846-8115170 Caenorhabditis elegans
Exon59258   125   II: 8122911-8123035 Caenorhabditis elegans
Exon59259   241   II: 8124016-8124256 Caenorhabditis elegans
Exon59260   224   II: 8124305-8124528 Caenorhabditis elegans
Exon59261   124   II: 8124579-8124702 Caenorhabditis elegans
Exon59262   157   II: 8124754-8124910 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C41C4.4a.1 8112243 8124910 -1

1 Sequence

Length
3401

1 Sequence Ontology Term

Identifier Name Description
transcript