WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E12.1.1 Sequence Name  F49E12.1.1
Length (nt)  2083   Chromosome Location  II: 8400299-8404848
Chromosome . Primary Identifier  II Chromosome Location . Start  8400299
Chromosome Location . End  8404848 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E12.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009897 skpo-1 F49E12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E12.1 F49E12.1 1968   II: 8400410-8400512

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F49E12.1.1 8400299 8404848 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon60137   214   II: 8400299-8400512 Caenorhabditis elegans
Exon60138   209   II: 8401060-8401268 Caenorhabditis elegans
Exon60139   66   II: 8401316-8401381 Caenorhabditis elegans
Exon60140   58   II: 8401430-8401487 Caenorhabditis elegans
Exon60141   126   II: 8401987-8402112 Caenorhabditis elegans
Exon60142   186   II: 8402225-8402410 Caenorhabditis elegans
Exon60143   165   II: 8402639-8402803 Caenorhabditis elegans
Exon60144   125   II: 8402848-8402972 Caenorhabditis elegans
Exon60145   63   II: 8403021-8403083 Caenorhabditis elegans
Exon60146   109   II: 8403126-8403234 Caenorhabditis elegans
Exon60147   104   II: 8403280-8403383 Caenorhabditis elegans
Exon60148   110   II: 8403582-8403691 Caenorhabditis elegans
Exon60149   234   II: 8403899-8404132 Caenorhabditis elegans
Exon60150   148   II: 8404184-8404331 Caenorhabditis elegans
Exon60151   113   II: 8404375-8404487 Caenorhabditis elegans
Exon60152   53   II: 8404796-8404848 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F49E12.1.1 8400299 8404848 -1

1 Sequence

Length
2083

1 Sequence Ontology Term

Identifier Name Description
transcript