WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2085.5a.1 Sequence Name  D2085.5a.1
Length (nt)  3367   Chromosome Location  II: 8669133-8677269
Chromosome . Primary Identifier  II Chromosome Location . Start  8669133
Chromosome Location . End  8677269 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2085.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008430 hgap-2 D2085.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2085.5a D2085.5a 3147   II: 8669353-8669461

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5a.1 8669133 8677269 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61066   329   II: 8669133-8669461 Caenorhabditis elegans
Exon61089   117   II: 8669511-8669627 Caenorhabditis elegans
Exon61112   166   II: 8669683-8669848 Caenorhabditis elegans
Exon61135   429   II: 8670176-8670604 Caenorhabditis elegans
Exon61158   248   II: 8670660-8670907 Caenorhabditis elegans
Exon61181   270   II: 8671360-8671629 Caenorhabditis elegans
Exon61204   82   II: 8671676-8671757 Caenorhabditis elegans
Exon61241   418   II: 8672707-8673124 Caenorhabditis elegans
Exon61264   123   II: 8673173-8673295 Caenorhabditis elegans
Exon61287   104   II: 8673617-8673720 Caenorhabditis elegans
Exon61310   399   II: 8673773-8674171 Caenorhabditis elegans
Exon61333   477   II: 8674225-8674701 Caenorhabditis elegans
Exon61356   138   II: 8674868-8675005 Caenorhabditis elegans
Exon61384   67   II: 8677203-8677269 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5a.1 8669133 8677269 -1

1 Sequence

Length
3367

1 Sequence Ontology Term

Identifier Name Description
transcript