WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2085.5b.6 Sequence Name  D2085.5b.6
Length (nt)  3500   Chromosome Location  II: 8669134-8677892
Chromosome . Primary Identifier  II Chromosome Location . Start  8669134
Chromosome Location . End  8677892 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2085.5b.6

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008430 hgap-2 D2085.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2085.5b D2085.5b 3024   II: 8669353-8669461

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5b.6 8669134 8677892 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61068   328   II: 8669134-8669461 Caenorhabditis elegans
Exon61095   117   II: 8669511-8669627 Caenorhabditis elegans
Exon61118   166   II: 8669683-8669848 Caenorhabditis elegans
Exon61141   429   II: 8670176-8670604 Caenorhabditis elegans
Exon61164   248   II: 8670660-8670907 Caenorhabditis elegans
Exon61187   270   II: 8671360-8671629 Caenorhabditis elegans
Exon61210   82   II: 8671676-8671757 Caenorhabditis elegans
Exon61247   418   II: 8672707-8673124 Caenorhabditis elegans
Exon61270   123   II: 8673173-8673295 Caenorhabditis elegans
Exon61293   104   II: 8673617-8673720 Caenorhabditis elegans
Exon61316   399   II: 8673773-8674171 Caenorhabditis elegans
Exon61339   477   II: 8674225-8674701 Caenorhabditis elegans
Exon61362   138   II: 8674868-8675005 Caenorhabditis elegans
Exon61388   201   II: 8677692-8677892 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5b.6 8669134 8677892 -1

1 Sequence

Length
3500

1 Sequence Ontology Term

Identifier Name Description
transcript