WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2085.5f.1 Sequence Name  D2085.5f.1
Length (nt)  3090   Chromosome Location  II: 8669353-8676384
Chromosome . Primary Identifier  II Chromosome Location . Start  8669353
Chromosome Location . End  8676384 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2085.5f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008430 hgap-2 D2085.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2085.5f D2085.5f 3090   II: 8669353-8669461

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5f.1 8669353 8676384 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61080   109   II: 8669353-8669461 Caenorhabditis elegans
Exon61102   117   II: 8669511-8669627 Caenorhabditis elegans
Exon61125   166   II: 8669683-8669848 Caenorhabditis elegans
Exon61148   429   II: 8670176-8670604 Caenorhabditis elegans
Exon61171   248   II: 8670660-8670907 Caenorhabditis elegans
Exon61194   270   II: 8671360-8671629 Caenorhabditis elegans
Exon61217   82   II: 8671676-8671757 Caenorhabditis elegans
Exon61254   418   II: 8672707-8673124 Caenorhabditis elegans
Exon61277   123   II: 8673173-8673295 Caenorhabditis elegans
Exon61300   104   II: 8673617-8673720 Caenorhabditis elegans
Exon61323   399   II: 8673773-8674171 Caenorhabditis elegans
Exon61346   477   II: 8674225-8674701 Caenorhabditis elegans
Exon61368   138   II: 8674868-8675005 Caenorhabditis elegans
Exon61382   10   II: 8676375-8676384 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5f.1 8669353 8676384 -1

1 Sequence

Length
3090

1 Sequence Ontology Term

Identifier Name Description
transcript