WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2085.5h.1 Sequence Name  D2085.5h.1
Length (nt)  3420   Chromosome Location  II: 8669353-8677269
Chromosome . Primary Identifier  II Chromosome Location . Start  8669353
Chromosome Location . End  8677269 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2085.5h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008430 hgap-2 D2085.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2085.5h D2085.5h 3420   II: 8669353-8669461

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5h.1 8669353 8677269 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61082   109   II: 8669353-8669461 Caenorhabditis elegans
Exon61106   117   II: 8669511-8669627 Caenorhabditis elegans
Exon61129   166   II: 8669683-8669848 Caenorhabditis elegans
Exon61152   429   II: 8670176-8670604 Caenorhabditis elegans
Exon61175   248   II: 8670660-8670907 Caenorhabditis elegans
Exon61198   270   II: 8671360-8671629 Caenorhabditis elegans
Exon61221   82   II: 8671676-8671757 Caenorhabditis elegans
Exon61232   156   II: 8672050-8672205 Caenorhabditis elegans
Exon61239   117   II: 8672253-8672369 Caenorhabditis elegans
Exon61258   418   II: 8672707-8673124 Caenorhabditis elegans
Exon61281   123   II: 8673173-8673295 Caenorhabditis elegans
Exon61304   104   II: 8673617-8673720 Caenorhabditis elegans
Exon61327   399   II: 8673773-8674171 Caenorhabditis elegans
Exon61350   477   II: 8674225-8674701 Caenorhabditis elegans
Exon61372   138   II: 8674868-8675005 Caenorhabditis elegans
Exon61385   67   II: 8677203-8677269 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5h.1 8669353 8677269 -1

1 Sequence

Length
3420

1 Sequence Ontology Term

Identifier Name Description
transcript