WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2085.5c.1 Sequence Name  D2085.5c.1
Length (nt)  3267   Chromosome Location  II: 8669353-8677878
Chromosome . Primary Identifier  II Chromosome Location . Start  8669353
Chromosome Location . End  8677878 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2085.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008430 hgap-2 D2085.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2085.5c D2085.5c 3267   II: 8669353-8669461

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5c.1 8669353 8677878 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61083   109   II: 8669353-8669461 Caenorhabditis elegans
Exon61099   117   II: 8669511-8669627 Caenorhabditis elegans
Exon61122   166   II: 8669683-8669848 Caenorhabditis elegans
Exon61145   429   II: 8670176-8670604 Caenorhabditis elegans
Exon61168   248   II: 8670660-8670907 Caenorhabditis elegans
Exon61191   270   II: 8671360-8671629 Caenorhabditis elegans
Exon61214   82   II: 8671676-8671757 Caenorhabditis elegans
Exon61251   418   II: 8672707-8673124 Caenorhabditis elegans
Exon61274   123   II: 8673173-8673295 Caenorhabditis elegans
Exon61297   104   II: 8673617-8673720 Caenorhabditis elegans
Exon61320   399   II: 8673773-8674171 Caenorhabditis elegans
Exon61343   477   II: 8674225-8674701 Caenorhabditis elegans
Exon61365   138   II: 8674868-8675005 Caenorhabditis elegans
Exon61386   187   II: 8677692-8677878 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5c.1 8669353 8677878 -1

1 Sequence

Length
3267

1 Sequence Ontology Term

Identifier Name Description
transcript