WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C34C6.5b Sequence Name  C34C6.5b
Length (nt)  1272   Chromosome Location  II: 8699330-8699470
Chromosome . Primary Identifier  II Chromosome Location . Start  8699330
Chromosome Location . End  8699470
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C34C6.5b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE35833 SPHK-1, isoform b 46.5 423 Caenorhabditis elegans
 

Other

20 RNAi

WormBase ID
WBRNAi00041854
WBRNAi00011582
WBRNAi00102828
WBRNAi00102829
WBRNAi00029510
WBRNAi00102797
WBRNAi00060295
WBRNAi00060296
WBRNAi00060297
WBRNAi00060298
WBRNAi00060299
WBRNAi00060300
WBRNAi00060301
WBRNAi00060302
WBRNAi00060303
WBRNAi00092875
WBRNAi00088755
WBRNAi00088648
WBRNAi00102804
WBRNAi00075871

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C34C6.5b 8699330 8699470 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007918 sphk-1 C34C6.5 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:C34C6.5b 8699330 8699470 -1
CDS:C34C6.5b 8699517 8699864 -1
CDS:C34C6.5b 8699968 8700074 -1
CDS:C34C6.5b 8700122 8700473 -1
CDS:C34C6.5b 8700601 8700698 -1
CDS:C34C6.5b 8700750 8700881 -1
CDS:C34C6.5b 8701425 8701518 -1

1 Sequence

Length
1272

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C34C6.5b.1 C34C6.5b.1 1272   II: 8699330-8701518