WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46C5.3.1 Sequence Name  F46C5.3.1
Length (nt)  1336   Chromosome Location  II: 8826069-8828215
Chromosome . Primary Identifier  II Chromosome Location . Start  8826069
Chromosome Location . End  8828215 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46C5.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003544 nas-25 F46C5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46C5.3 F46C5.3 1200   II: 8826110-8826154

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46C5.3.1 8826069 8828215 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61868   86   II: 8826069-8826154 Caenorhabditis elegans
Exon61869   63   II: 8826397-8826459 Caenorhabditis elegans
Exon61870   82   II: 8826584-8826665 Caenorhabditis elegans
Exon61871   90   II: 8826716-8826805 Caenorhabditis elegans
Exon61872   104   II: 8826973-8827076 Caenorhabditis elegans
Exon61873   105   II: 8827123-8827227 Caenorhabditis elegans
Exon61874   98   II: 8827271-8827368 Caenorhabditis elegans
Exon61875   244   II: 8827414-8827657 Caenorhabditis elegans
Exon61876   254   II: 8827706-8827959 Caenorhabditis elegans
Exon61877   210   II: 8828006-8828215 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46C5.3.1 8826069 8828215 1

1 Sequence

Length
1336

1 Sequence Ontology Term

Identifier Name Description
transcript