WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F44G4.8a.1 Sequence Name  F44G4.8a.1
Length (nt)  4510   Chromosome Location  II: 9005796-9019798
Chromosome . Primary Identifier  II Chromosome Location . Start  9005796
Chromosome Location . End  9019798 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F44G4.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009717 dep-1 F44G4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F44G4.8a F44G4.8a 4104   II: 9006171-9006311

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F44G4.8a.1 9005796 9019798 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon62387   516   II: 9005796-9006311 Caenorhabditis elegans
Exon62389   136   II: 9006576-9006711 Caenorhabditis elegans
Exon62391   230   II: 9006765-9006994 Caenorhabditis elegans
Exon62393   451   II: 9007043-9007493 Caenorhabditis elegans
Exon62396   357   II: 9007703-9008059 Caenorhabditis elegans
Exon62397   118   II: 9009074-9009191 Caenorhabditis elegans
Exon62398   256   II: 9015415-9015670 Caenorhabditis elegans
Exon62399   76   II: 9015749-9015824 Caenorhabditis elegans
Exon62400   397   II: 9016356-9016752 Caenorhabditis elegans
Exon62401   652   II: 9016798-9017449 Caenorhabditis elegans
Exon62402   148   II: 9017530-9017677 Caenorhabditis elegans
Exon62403   155   II: 9017724-9017878 Caenorhabditis elegans
Exon62404   159   II: 9018007-9018165 Caenorhabditis elegans
Exon62405   143   II: 9018326-9018468 Caenorhabditis elegans
Exon62406   196   II: 9018514-9018709 Caenorhabditis elegans
Exon62407   163   II: 9018754-9018916 Caenorhabditis elegans
Exon62408   99   II: 9019382-9019480 Caenorhabditis elegans
Exon62409   258   II: 9019541-9019798 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F44G4.8a.1 9005796 9019798 -1

1 Sequence

Length
4510

1 Sequence Ontology Term

Identifier Name Description
transcript