WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2013.8a.1 Sequence Name  D2013.8a.1
Length (nt)  3462   Chromosome Location  II: 9334014-9338896
Chromosome . Primary Identifier  II Chromosome Location . Start  9334014
Chromosome Location . End  9338896 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2013.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004744 scp-1 D2013.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2013.8a D2013.8a 3264   II: 9334053-9334126

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2013.8a.1 9334014 9338896 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon63342   113   II: 9334014-9334126 Caenorhabditis elegans
Exon63345   143   II: 9334484-9334626 Caenorhabditis elegans
Exon63346   432   II: 9334670-9335101 Caenorhabditis elegans
Exon63349   95   II: 9335150-9335244 Caenorhabditis elegans
Exon63352   958   II: 9335294-9336251 Caenorhabditis elegans
Exon63356   91   II: 9336300-9336390 Caenorhabditis elegans
Exon63362   376   II: 9336969-9337344 Caenorhabditis elegans
Exon63367   218   II: 9337395-9337612 Caenorhabditis elegans
Exon63373   199   II: 9337661-9337859 Caenorhabditis elegans
Exon63379   438   II: 9337911-9338348 Caenorhabditis elegans
Exon63385   126   II: 9338451-9338576 Caenorhabditis elegans
Exon63395   273   II: 9338624-9338896 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2013.8a.1 9334014 9338896 1

1 Sequence

Length
3462

1 Sequence Ontology Term

Identifier Name Description
transcript