WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK1321.2d.1 Sequence Name  ZK1321.2d.1
Length (nt)  1634   Chromosome Location  II: 9760751-9767987
Chromosome . Primary Identifier  II Chromosome Location . Start  9760751
Chromosome Location . End  9767987 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK1321.2d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00014261 shk-1 ZK1321.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1321.2d ZK1321.2d 1506   II: 9760879-9760898

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK1321.2d.1 9760751 9767987 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon64457   148   II: 9760751-9760898 Caenorhabditis elegans
Exon64460   129   II: 9761951-9762079 Caenorhabditis elegans
Exon64465   120   II: 9765426-9765545 Caenorhabditis elegans
Exon64471   84   II: 9765687-9765770 Caenorhabditis elegans
Exon64477   93   II: 9765815-9765907 Caenorhabditis elegans
Exon64481   36   II: 9766056-9766091 Caenorhabditis elegans
Exon64485   100   II: 9766352-9766451 Caenorhabditis elegans
Exon64491   173   II: 9766607-9766779 Caenorhabditis elegans
Exon64497   158   II: 9766830-9766987 Caenorhabditis elegans
Exon64503   109   II: 9767032-9767140 Caenorhabditis elegans
Exon64509   93   II: 9767187-9767279 Caenorhabditis elegans
Exon64515   181   II: 9767328-9767508 Caenorhabditis elegans
Exon64521   20   II: 9767594-9767613 Caenorhabditis elegans
Exon64527   100   II: 9767724-9767823 Caenorhabditis elegans
Exon64531   90   II: 9767898-9767987 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK1321.2d.1 9760751 9767987 1

1 Sequence

Length
1634

1 Sequence Ontology Term

Identifier Name Description
transcript