WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C08H9.1.1 Sequence Name  C08H9.1.1
Length (nt)  1567   Chromosome Location  II: 9875179-9877887
Chromosome . Primary Identifier  II Chromosome Location . Start  9875179
Chromosome Location . End  9877887 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C08H9.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007462 ctsa-3.2 C08H9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C08H9.1 C08H9.1 1554   II: 9875179-9875342

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C08H9.1.1 9875179 9877887 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon64740   164   II: 9875179-9875342 Caenorhabditis elegans
Exon64741   166   II: 9875391-9875556 Caenorhabditis elegans
Exon64742   137   II: 9875884-9876020 Caenorhabditis elegans
Exon64743   225   II: 9876074-9876298 Caenorhabditis elegans
Exon64744   70   II: 9876344-9876413 Caenorhabditis elegans
Exon64745   107   II: 9876460-9876566 Caenorhabditis elegans
Exon64746   109   II: 9876735-9876843 Caenorhabditis elegans
Exon64747   155   II: 9876895-9877049 Caenorhabditis elegans
Exon64748   79   II: 9877150-9877228 Caenorhabditis elegans
Exon64749   109   II: 9877294-9877402 Caenorhabditis elegans
Exon64750   122   II: 9877449-9877570 Caenorhabditis elegans
Exon64751   124   II: 9877764-9877887 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C08H9.1.1 9875179 9877887 1

1 Sequence

Length
1567

1 Sequence Ontology Term

Identifier Name Description
transcript