WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:R53.3a Sequence Name  R53.3a
Length (nt)  1632   Chromosome Location  II: 9955186-9955305
Chromosome . Primary Identifier  II Chromosome Location . Start  9955186
Chromosome Location . End  9955305
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R53.3a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE03572 EGL-43, isoform a 59.3 543 Caenorhabditis elegans
 

Other

44 RNAi

WormBase ID
WBRNAi00107800
WBRNAi00107697
WBRNAi00107699
WBRNAi00107698
WBRNAi00107799
WBRNAi00107798
WBRNAi00089842
WBRNAi00052038
WBRNAi00009084
WBRNAi00078882
WBRNAi00070945
WBRNAi00070944
WBRNAi00026131
WBRNAi00099861
WBRNAi00100460
WBRNAi00027692
WBRNAi00070216
WBRNAi00100834
WBRNAi00071200
WBRNAi00099255
WBRNAi00099659
WBRNAi00099457
WBRNAi00100086
WBRNAi00100273
WBRNAi00070949
WBRNAi00070950
WBRNAi00070209
WBRNAi00070210
WBRNAi00070211
WBRNAi00070212

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:R53.3a 9955186 9955305 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001207 egl-43 R53.3 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:R53.3a 9955186 9955305 1
CDS:R53.3a 9957013 9957114 1
CDS:R53.3a 9957170 9957300 1
CDS:R53.3a 9958588 9958749 1
CDS:R53.3a 9959750 9959864 1
CDS:R53.3a 9960300 9960485 1
CDS:R53.3a 9960939 9961036 1
CDS:R53.3a 9961187 9961691 1
CDS:R53.3a 9961829 9961900 1
CDS:R53.3a 9962013 9962153 1

1 Sequence

Length
1632

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R53.3a.1 R53.3a.1 2475   II: 9955185-9962995