WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R53.3a.1 Sequence Name  R53.3a.1
Length (nt)  2475   Chromosome Location  II: 9955185-9962995
Chromosome . Primary Identifier  II Chromosome Location . Start  9955185
Chromosome Location . End  9962995 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R53.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001207 egl-43 R53.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R53.3a R53.3a 1632   II: 9955186-9955305

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R53.3a.1 9955185 9962995 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon65152   121   II: 9955185-9955305 Caenorhabditis elegans
Exon65155   102   II: 9957013-9957114 Caenorhabditis elegans
Exon65157   131   II: 9957170-9957300 Caenorhabditis elegans
Exon65160   162   II: 9958588-9958749 Caenorhabditis elegans
Exon65163   115   II: 9959750-9959864 Caenorhabditis elegans
Exon65167   186   II: 9960300-9960485 Caenorhabditis elegans
Exon65170   98   II: 9960939-9961036 Caenorhabditis elegans
Exon65174   505   II: 9961187-9961691 Caenorhabditis elegans
Exon65178   72   II: 9961829-9961900 Caenorhabditis elegans
Exon65183   983   II: 9962013-9962995 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R53.3a.1 9955185 9962995 1

1 Sequence

Length
2475

1 Sequence Ontology Term

Identifier Name Description
transcript