WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01E8.5.1 Sequence Name  T01E8.5.1
Length (nt)  4054   Chromosome Location  II: 10242596-10247638
Chromosome . Primary Identifier  II Chromosome Location . Start  10242596
Chromosome Location . End  10247638 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01E8.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011333 nrde-2 T01E8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01E8.5 T01E8.5 3813   II: 10242809-10242923

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01E8.5.1 10242596 10247638 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon65762   328   II: 10242596-10242923 Caenorhabditis elegans
Exon65763   104   II: 10243186-10243289 Caenorhabditis elegans
Exon65764   578   II: 10243339-10243916 Caenorhabditis elegans
Exon65765   907   II: 10243977-10244883 Caenorhabditis elegans
Exon65766   507   II: 10244956-10245462 Caenorhabditis elegans
Exon65767   606   II: 10245545-10246150 Caenorhabditis elegans
Exon65768   165   II: 10246196-10246360 Caenorhabditis elegans
Exon65769   122   II: 10246410-10246531 Caenorhabditis elegans
Exon65770   413   II: 10246706-10247118 Caenorhabditis elegans
Exon65771   77   II: 10247164-10247240 Caenorhabditis elegans
Exon65772   114   II: 10247286-10247399 Caenorhabditis elegans
Exon65773   62   II: 10247449-10247510 Caenorhabditis elegans
Exon65774   71   II: 10247568-10247638 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01E8.5.1 10242596 10247638 -1

1 Sequence

Length
4054

1 Sequence Ontology Term

Identifier Name Description
transcript