WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M28.9.1 Sequence Name  M28.9.1
Length (nt)  2610   Chromosome Location  II: 10639410-10643379
Chromosome . Primary Identifier  II Chromosome Location . Start  10639410
Chromosome Location . End  10643379 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M28.9.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010900 M28.9 M28.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M28.9 M28.9 2454   II: 10639783-10640007

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M28.9.1 10639410 10643379 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon66616   93   II: 10639410-10639502 Caenorhabditis elegans
Exon66617   243   II: 10639765-10640007 Caenorhabditis elegans
Exon66618   183   II: 10640055-10640237 Caenorhabditis elegans
Exon66619   157   II: 10640285-10640441 Caenorhabditis elegans
Exon66620   161   II: 10640548-10640708 Caenorhabditis elegans
Exon66621   159   II: 10640759-10640917 Caenorhabditis elegans
Exon66622   84   II: 10641146-10641229 Caenorhabditis elegans
Exon66623   159   II: 10641278-10641436 Caenorhabditis elegans
Exon66624   121   II: 10641487-10641607 Caenorhabditis elegans
Exon66625   223   II: 10641654-10641876 Caenorhabditis elegans
Exon66626   187   II: 10641996-10642182 Caenorhabditis elegans
Exon66627   183   II: 10642251-10642433 Caenorhabditis elegans
Exon66628   81   II: 10642480-10642560 Caenorhabditis elegans
Exon66630   219   II: 10642606-10642824 Caenorhabditis elegans
Exon66631   95   II: 10642976-10643070 Caenorhabditis elegans
Exon66632   262   II: 10643118-10643379 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M28.9.1 10639410 10643379 1

1 Sequence

Length
2610

1 Sequence Ontology Term

Identifier Name Description
transcript