WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M28.4.1 Sequence Name  M28.4.1
Length (nt)  2360   Chromosome Location  II: 10643703-10646978
Chromosome . Primary Identifier  II Chromosome Location . Start  10643703
Chromosome Location . End  10646978 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M28.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010895 M28.4 M28.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M28.4 M28.4 2328   II: 10643703-10643903

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M28.4.1 10643703 10646978 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon66633   201   II: 10643703-10643903 Caenorhabditis elegans
Exon66634   189   II: 10643950-10644138 Caenorhabditis elegans
Exon66635   157   II: 10644189-10644345 Caenorhabditis elegans
Exon66636   161   II: 10644533-10644693 Caenorhabditis elegans
Exon66637   159   II: 10644737-10644895 Caenorhabditis elegans
Exon66638   84   II: 10645118-10645201 Caenorhabditis elegans
Exon66639   159   II: 10645248-10645406 Caenorhabditis elegans
Exon66640   124   II: 10645451-10645574 Caenorhabditis elegans
Exon66641   241   II: 10645626-10645866 Caenorhabditis elegans
Exon66642   181   II: 10645917-10646097 Caenorhabditis elegans
Exon66643   183   II: 10646142-10646324 Caenorhabditis elegans
Exon66644   81   II: 10646371-10646451 Caenorhabditis elegans
Exon66645   201   II: 10646495-10646695 Caenorhabditis elegans
Exon66646   239   II: 10646740-10646978 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M28.4.1 10643703 10646978 1

1 Sequence

Length
2360

1 Sequence Ontology Term

Identifier Name Description
transcript