WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:D2089.4a Sequence Name  D2089.4a
Length (nt)  1848   Chromosome Location  II: 10675658-10675666
Chromosome . Primary Identifier  II Chromosome Location . Start  10675658
Chromosome Location . End  10675666
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2089.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE30508 PTB-1, isoform a 67.1 615 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00043511
WBRNAi00030423
WBRNAi00066342

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:D2089.4a 10675658 10675666 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004207 ptb-1 D2089.4 Caenorhabditis elegans

14 Locations


Feature . Primary Identifier
Start End Strand
CDS:D2089.4a 10675658 10675666 1
CDS:D2089.4a 10677590 10677874 1
CDS:D2089.4a 10678387 10678455 1
CDS:D2089.4a 10678758 10678868 1
CDS:D2089.4a 10678993 10679064 1
CDS:D2089.4a 10679736 10679819 1
CDS:D2089.4a 10686756 10686927 1
CDS:D2089.4a 10687114 10687335 1
CDS:D2089.4a 10687381 10687506 1
CDS:D2089.4a 10687898 10688040 1
CDS:D2089.4a 10688477 10688510 1
CDS:D2089.4a 10688758 10688850 1
CDS:D2089.4a 10688918 10689212 1
CDS:D2089.4a 10689658 10689790 1

1 Sequence

Length
1848

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:D2089.4a.1 D2089.4a.1 2396   II: 10675602-10690282