WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52A11.4f.1 Sequence Name  C52A11.4f.1
Length (nt)  7834   Chromosome Location  II: 10738635-10772813
Chromosome . Primary Identifier  II Chromosome Location . Start  10738635
Chromosome Location . End  10772813 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52A11.4f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003404 mpz-1 C52A11.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52A11.4f C52A11.4f 7194   II: 10739275-10739358

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4f.1 10738635 10772813 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

42 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon66821   724   II: 10738635-10739358 Caenorhabditis elegans
Exon66834   147   II: 10739660-10739806 Caenorhabditis elegans
Exon66843   141   II: 10739853-10739993 Caenorhabditis elegans
Exon66852   309   II: 10740130-10740438 Caenorhabditis elegans
Exon66857   96   II: 10741125-10741220 Caenorhabditis elegans
Exon66870   599   II: 10741497-10742095 Caenorhabditis elegans
Exon66880   67   II: 10742488-10742554 Caenorhabditis elegans
Exon66888   93   II: 10746348-10746440 Caenorhabditis elegans
Exon66896   202   II: 10746694-10746895 Caenorhabditis elegans
Exon66904   926   II: 10747055-10747980 Caenorhabditis elegans
Exon66912   234   II: 10748244-10748477 Caenorhabditis elegans
Exon66921   570   II: 10748528-10749097 Caenorhabditis elegans
Exon66928   75   II: 10749856-10749930 Caenorhabditis elegans
Exon66935   120   II: 10751054-10751173 Caenorhabditis elegans
Exon66942   127   II: 10751222-10751348 Caenorhabditis elegans
Exon66949   99   II: 10751463-10751561 Caenorhabditis elegans
Exon66956   107   II: 10751725-10751831 Caenorhabditis elegans
Exon66963   181   II: 10752126-10752306 Caenorhabditis elegans
Exon66971   77   II: 10752356-10752432 Caenorhabditis elegans
Exon66977   57   II: 10753531-10753587 Caenorhabditis elegans
Exon66983   75   II: 10754011-10754085 Caenorhabditis elegans
Exon66989   87   II: 10754430-10754516 Caenorhabditis elegans
Exon66995   85   II: 10756732-10756816 Caenorhabditis elegans
Exon67001   134   II: 10757050-10757183 Caenorhabditis elegans
Exon67008   286   II: 10757494-10757779 Caenorhabditis elegans
Exon67015   521   II: 10757953-10758473 Caenorhabditis elegans
Exon67022   92   II: 10758889-10758980 Caenorhabditis elegans
Exon67030   124   II: 10759359-10759482 Caenorhabditis elegans
Exon67037   146   II: 10759604-10759749 Caenorhabditis elegans
Exon67044   152   II: 10759793-10759944 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4f.1 10738635 10772813 -1

1 Sequence

Length
7834

1 Sequence Ontology Term

Identifier Name Description
transcript